phpobo/phpobo

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Details

github.com/mpi2/PhpObo

Source

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Installs: 214

Dependents: 1

Suggesters: 0

Security: 0

Stars: 2

Watchers: 3

Forks: 3

Open Issues: 1

dev-master 2014-01-03 16:38 UTC

Requires

  • php: >=5.3.0

Apache-2.0 dccd72b7510a6d9e2348badbcfd2be68dec02d0c

This package is not auto-updated.

Last update: 2024-04-23 04:07:15 UTC

README

PhpObo is a library for reading, creating and modifying files in the OBO format (http://geneontology.org/GO.format.obo-1_2.shtml) using the PHP programming language. It's not a massive, fully featured solution, but you are more than welcome to extend it. PhpObo is capable of:

  • Reading in (parsing) OBO files
  • Creating and manipulating OBO documents using a PHP API
  • Serializing generated/parsed OBO documents back out again

Installation

  1. Download and Install the Composer dependency management tool (http://getcomposer.org)
  2. Add PhpObo to your composer.json file as a dependency or have it autoload the PhpObo directory if you downloaded the source archive previously
  3. If you haven't done so already, you need to prime the Composer autoloader - run this in your console: php composer.phar install
  4. Look at the example files (*_example.php) for an idea of how to use the library. You might want to get the Mammalian Phenotype (MP) OBO file from http://www.obofoundry.org/ to run the examples (rename it to mp.obo)